Package: agvgd 0.1.2

agvgd: An R Implementation of the 'Align-GVGD' Method

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.

Authors:Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd]

agvgd_0.1.2.tar.gz
agvgd_0.1.2.zip(r-4.7)agvgd_0.1.2.zip(r-4.6)agvgd_0.1.2.zip(r-4.5)
agvgd_0.1.2.tgz(r-4.6-any)agvgd_0.1.2.tgz(r-4.5-any)
agvgd_0.1.2.tar.gz(r-4.7-any)agvgd_0.1.2.tar.gz(r-4.6-any)
agvgd_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
agvgd/json (API)
NEWS

# Install 'agvgd' in R:
install.packages('agvgd', repos = c('https://ramiromagno.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/maialab/agvgd/issues

Pkgdown/docs site:https://maialab.org

On CRAN:

Conda:

3.18 score 3 stars 6 scripts 233 downloads 16 exports 32 dependencies

Last updated from:4e746e319e. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK152
source / vignettesOK212
linux-release-x86_64OK145
macos-release-arm64OK96
macos-oldrel-arm64OK82
windows-develOK164
windows-releaseOK115
windows-oldrelOK97
wasm-releaseOK124

Exports:%>%agvgdalignment_fileamino_acidscpv_rangesdevgdgvpoi_to_resprofile_to_alignmentread_agvgdweb_resultsread_alignmentread_substitutionsres_to_poiwrite_alignmentwrite_substitutions

Dependencies:ade4clicpp11crayondplyrgenericsgluegranthamlatticelifecyclemagrittrMASSnlmepillarpixmappkgconfigpurrrR6RcppRcppArmadillorlangsegmentedseqinrspstringistringrtibbletidyrtidyselectutf8vctrswithr