gwasrapidd - 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

'GWAS' R 'API' Data Download. This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.

Last updated 10 months ago

thirdpartyclientbiomedicalinformaticsgenomewideassociationsnpassociation-studiesgwas-cataloghumanrest-clienttraittrait-ontology

8.33 score 91 stars 2 packages 44 scripts 488 downloads

wig - Import WIG Data into R in Long Format

Import WIG data into R in long format.

Last updated 2 years ago

3.48 score 8 scripts 142 downloads

mskcc.oncotree - Interface to the 'OncoTree' API

Programmatic access to 'OncoTree' API <http://oncotree.mskcc.org/>. Get access to tumor main types, identifiers and utility routines to map across to other tumor classification systems.

Last updated 2 years ago

3.48 score 6 stars 7 scripts 157 downloads

quincunx - REST API Client for the 'PGS' Catalog

Programmatic access to the 'PGS' Catalog. This package provides easy access to 'PGS' Catalog data by accessing the REST API <https://www.pgscatalog.org/rest/>.

Last updated 2 years ago

ebigwaspolygenic-risk-scorespolygenic-scores

3.10 score 14 stars 18 scripts 254 downloads

agvgd - An R Implementation of the 'Align-GVGD' Method

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.

Last updated 10 months ago

3.00 score 2 stars 7 scripts 318 downloads

agvgd - An R Implementation of the 'Align-GVGD' Method

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.

Last updated 10 months ago

3.00 score 2 stars 7 scripts 286 downloads

grantham - Calculate the 'Grantham' Distance

A minimal set of routines to calculate the 'Grantham' distance <doi:10.1126/science.185.4154.862>. The 'Grantham' distance attempts to provide a proxy for the evolutionary distance between two amino acids based on three key chemical properties: composition, polarity and molecular volume. In turn, evolutionary distance is used as a proxy for the impact of missense mutations. The higher the distance, the more deleterious the substitution is expected to be.

Last updated 3 months ago

2.78 score 4 stars 1 packages 7 scripts 304 downloads

grantham - Calculate the 'Grantham' Distance

A minimal set of routines to calculate the 'Grantham' distance <doi:10.1126/science.185.4154.862>. The 'Grantham' distance attempts to provide a proxy for the evolutionary distance between two amino acids based on three key chemical properties: composition, polarity and molecular volume. In turn, evolutionary distance is used as a proxy for the impact of missense mutations. The higher the distance, the more deleterious the substitution is expected to be.

Last updated 3 months ago

2.78 score 4 stars 1 packages 7 scripts 331 downloads

hospitals - Portuguese 'NHS' Hospitals

A data set of the Portuguese 'NHS' hospitals.

Last updated 3 years ago

2.70 score 2 scripts 171 downloads

ensemblr - R Client for the Ensembl REST API

R Client for the Ensembl REST API.

Last updated 3 years ago

2.70 score 1 stars 7 scripts

protean - Sequence Profiles of OncoKB Genes

A data package of sequence profiles of OncoKB genes. These profiles are obtained via Ensembl's REST API and derived from the pairwise alignment of the human sequence with its orthologs.

Last updated 11 months ago

2.00 score 4 scripts

geisha - GEISHA Expression Data

GEISHA expression data. These data are obtained from GEISHA <http://geisha.arizona.edu/geisha/downloads.jsp/>.

Last updated 3 years ago

1.70 score 1 stars