Package: ensemblr 0.0.1

ensemblr: R Client for the Ensembl REST API

R Client for the Ensembl REST API.

Authors:Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd]

ensemblr_0.0.1.tar.gz
ensemblr_0.0.1.zip(r-4.5)ensemblr_0.0.1.zip(r-4.4)ensemblr_0.0.1.zip(r-4.3)
ensemblr_0.0.1.tgz(r-4.4-any)ensemblr_0.0.1.tgz(r-4.3-any)
ensemblr_0.0.1.tar.gz(r-4.5-noble)ensemblr_0.0.1.tar.gz(r-4.4-noble)
ensemblr_0.0.1.tgz(r-4.4-emscripten)ensemblr_0.0.1.tgz(r-4.3-emscripten)
 |ensemblr.html✨
ensemblr/json (API)

# Install 'ensemblr' in R:
install.packages('ensemblr', repos = c('https://ramiromagno.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/maialab/ensemblr/issues

Datasets:

On CRAN:

2.70 score 1 stars 7 scripts 30 exports 40 dependencies

Last updated 3 years agofrom:23d56975c4. Checks:ERROR: 1 OK: 6. Indexed: no.

TargetResultDate
Doc / VignettesFAILOct 23 2024
R-4.5-winOKOct 23 2024
R-4.5-linuxOKOct 23 2024
R-4.4-winOKOct 23 2024
R-4.4-macOKOct 23 2024
R-4.3-winOKOct 23 2024
R-4.3-macOKOct 23 2024

Exports:%>%genomic_rangeget_analysesget_assembliesget_cytogenetic_bandsget_data_versionsget_divisionsget_ensembl_genomes_versionget_eqtl_pval_by_geneget_eqtl_pval_by_variantget_eqtl_tissuesget_idget_individualsget_karyotypesget_ld_variants_by_pairget_ld_variants_by_pair_combnget_ld_variants_by_rangeget_ld_variants_by_windowget_populationsget_rest_versionget_software_versionget_speciesget_toplevel_sequence_infoget_toplevel_sequencesget_variant_consequencesget_variation_sourcesget_versioningget_xrefs_by_ensembl_idget_xrefs_by_geneis_ensembl_reachable

Dependencies:askpassassertthatcliconcatenatecpp11curldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpingrpkgconfigplyrprocessxpspurrrR6Rcpprlangrvestselectrstringistringrsystibbletidyrtidyselecttriebeardurltoolsutf8vctrswithrxml2

Ensembl REST API Coverage

Rendered fromapi_coverage.Rmdusingknitr::rmarkdownon Oct 23 2024.

Last update: 2021-11-08
Started: 2019-07-24

Readme and manuals

Help Manual

Help pageTopics
Create genomic range stringsgenomic_range
Get analyses behind Ensembl databasesget_analyses
Get details about the genome assembly of a speciesget_assemblies
Get cytogenetic bands by speciesget_cytogenetic_bands
Retrieve the data release version(s) available on the Ensembl REST server.get_data_versions
Retrieve Ensembl divisionsget_divisions
Get Ensembl Genomes versionget_ensembl_genomes_version
Get eQTL details by gene ensembl identifierget_eqtl_pval_by_gene
Get eQTL details by variant identifierget_eqtl_pval_by_variant
Get tissues in the eQTL databaseget_eqtl_tissues
Get details about an Ensembl identifierget_id
Get individuals for a populationget_individuals
Get the karyotype of a speciesget_karyotypes
Get linkage disequilibrium data for variantsget_ld_variants_by_by_window get_ld_variants_by_pair get_ld_variants_by_pair_combn get_ld_variants_by_range get_ld_variants_by_window
Get populations for a speciesget_populations
Retrieve the current version of the Ensembl REST APIget_rest_version
Retrieve the Perl API versionget_software_version
Get Ensembl speciesget_species
Get toplevel sequences detailsget_toplevel_sequence_info
Get toplevel sequences by speciesget_toplevel_sequences
Retrieve variant consequencesget_variant_consequences
Retrieve variant sourcesget_variation_sources
Retrieve Ensembl REST versionsget_versioning
Get cross-references by Ensembl IDget_xrefs_by_ensembl_id
Get cross references by gene symbol or nameget_xrefs_by_gene
Is the Ensembl REST API server reachable?is_ensembl_reachable
Ensembl REST API Endpoints.rest_api_endpoints