Package: protean 0.1.2
protean: Sequence Profiles of OncoKB Genes
A data package of sequence profiles of OncoKB genes. These profiles are obtained via Ensembl's REST API and derived from the pairwise alignment of the human sequence with its orthologs.
Authors:
protean_0.1.2.tar.gz
protean_0.1.2.zip(r-4.5)protean_0.1.2.zip(r-4.4)protean_0.1.2.zip(r-4.3)
protean_0.1.2.tgz(r-4.4-any)protean_0.1.2.tgz(r-4.3-any)
protean_0.1.2.tar.gz(r-4.5-noble)protean_0.1.2.tar.gz(r-4.4-noble)
protean_0.1.2.tgz(r-4.4-emscripten)protean_0.1.2.tgz(r-4.3-emscripten)
protean.pdf |protean.html✨
protean/json (API)
# Install 'protean' in R: |
install.packages('protean', repos = c('https://ramiromagno.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/maialab/protean/issues
- exported_genes - Exported genes
- missing_genes - Missing genes
- oncokb_genes - OncoKB genes
Last updated 10 months agofrom:0e6628d51e. Checks:OK: 7. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 23 2024 |
R-4.5-win | OK | Aug 23 2024 |
R-4.5-linux | OK | Aug 23 2024 |
R-4.4-win | OK | Aug 23 2024 |
R-4.4-mac | OK | Aug 23 2024 |
R-4.3-win | OK | Aug 23 2024 |
R-4.3-mac | OK | Aug 23 2024 |
Exports:%>%download_gene_listfetch_oncokb_genesget_profileprofile_pathread_profilewrite_profilewrite_to_fasta
Dependencies:askpassassertthatbitbit64cachemclicliprcpp11crayoncurldplyrfansifastmapgenericsgluehmshttr2jsonlitelifecyclemagrittrmemoiseopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsreadrrlangstringistringrsystibbletidyjsontidyrtidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Download OncoKB Cancer Gene List | download_gene_list |
Exported genes | exported_genes |
Fetch current OncoKB genes | fetch_oncokb_genes |
Get sequence profiles | get_profile |
Missing genes | missing_genes |
OncoKB genes | oncokb_genes |
Get the path to a sequence profile | profile_path |
Read a sequence profile | read_profile |