Package: protean 0.1.2

protean: Sequence Profiles of OncoKB Genes

A data package of sequence profiles of OncoKB genes. These profiles are obtained via Ensembl's REST API and derived from the pairwise alignment of the human sequence with its orthologs.

Authors:Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd]

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protean.pdf |protean.html✨
protean/json (API)

# Install 'protean' in R:
install.packages('protean', repos = c('https://ramiromagno.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/maialab/protean/issues

Datasets:

On CRAN:

2.00 score 4 scripts 8 exports 43 dependencies

Last updated 12 months agofrom:0e6628d51e. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 21 2024
R-4.5-winOKNov 21 2024
R-4.5-linuxOKNov 21 2024
R-4.4-winOKNov 21 2024
R-4.4-macOKNov 21 2024
R-4.3-winOKNov 21 2024
R-4.3-macOKNov 21 2024

Exports:%>%download_gene_listfetch_oncokb_genesget_profileprofile_pathread_profilewrite_profilewrite_to_fasta

Dependencies:askpassassertthatbitbit64cachemclicliprcpp11crayoncurldplyrfansifastmapgenericsgluehmshttr2jsonlitelifecyclemagrittrmemoiseopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsreadrrlangstringistringrsystibbletidyjsontidyrtidyselecttzdbutf8vctrsvroomwithr