Package: protean 0.1.2

protean: Sequence Profiles of OncoKB Genes

A data package of sequence profiles of OncoKB genes. These profiles are obtained via Ensembl's REST API and derived from the pairwise alignment of the human sequence with its orthologs.

Authors:Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd]

protean_0.1.2.tar.gz
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protean.pdf |protean.html✨
protean/json (API)

# Install 'protean' in R:
install.packages('protean', repos = c('https://ramiromagno.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/maialab/protean/issues

Datasets:

On CRAN:

1.70 score 4 scripts 8 exports 43 dependencies

Last updated 1 years agofrom:0e6628d51e. Checks:5 OK, 3 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 19 2025
R-4.5-winNOTEFeb 19 2025
R-4.5-macNOTEFeb 19 2025
R-4.5-linuxNOTEFeb 19 2025
R-4.4-winOKFeb 19 2025
R-4.4-macOKFeb 19 2025
R-4.3-winOKFeb 19 2025
R-4.3-macOKFeb 19 2025

Exports:%>%download_gene_listfetch_oncokb_genesget_profileprofile_pathread_profilewrite_profilewrite_to_fasta

Dependencies:askpassassertthatbitbit64cachemclicliprcpp11crayoncurldplyrfansifastmapgenericsgluehmshttr2jsonlitelifecyclemagrittrmemoiseopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsreadrrlangstringistringrsystibbletidyjsontidyrtidyselecttzdbutf8vctrsvroomwithr