Package: grantham 0.1.1

grantham: Calculate the 'Grantham' Distance

A minimal set of routines to calculate the 'Grantham' distance <doi:10.1126/science.185.4154.862>. The 'Grantham' distance attempts to provide a proxy for the evolutionary distance between two amino acids based on three key chemical properties: composition, polarity and molecular volume. In turn, evolutionary distance is used as a proxy for the impact of missense mutations. The higher the distance, the more deleterious the substitution is expected to be.

Authors:Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd]

grantham_0.1.1.tar.gz
grantham_0.1.1.zip(r-4.7)grantham_0.1.1.zip(r-4.6)grantham_0.1.1.zip(r-4.5)
grantham_0.1.1.tgz(r-4.6-any)grantham_0.1.1.tgz(r-4.5-any)
grantham_0.1.1.tar.gz(r-4.7-any)grantham_0.1.1.tar.gz(r-4.6-any)
grantham_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
grantham/json (API)
NEWS

# Install 'grantham' in R:
install.packages('grantham', repos = c('https://ramiromagno.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/maialab/grantham/issues

Pkgdown/docs site:https://maialab.org

Datasets:

On CRAN:

Conda:

2.65 score 3 stars 1 packages 7 scripts 631 downloads 9 exports 20 dependencies

Last updated from:6768b1f580. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK124
source / vignettesOK173
linux-release-x86_64OK114
macos-release-arm64OK79
macos-oldrel-arm64OK83
windows-develOK78
windows-releaseOK73
windows-oldrelOK70
wasm-releaseOK104

Exports:%>%amino_acid_pairsamino_acidsas_one_letteras_three_lettergrantham_distancegrantham_distance_exactgrantham_distance_originalgrantham_equation

Dependencies:clicpp11dplyrgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr